JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC4_chr3_195741771_195816929	0/0	c0063	23409	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0064	23148	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0065	23169	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0066	23169	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0067	23506	1	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0068	22881	1	0	0	1	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0069	23361	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0070	22929	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0071	23217	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0072	23313	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0073	22449	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0074	23457	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0075	23457	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0076	23361	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0077	23457	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0078	15489	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0079	23171	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0080	23170	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0081	23169	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0082	23169	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0083	23505	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0084	23505	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0085	23025	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0086	23506	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0087	23506	1	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0088	23409	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0089	23457	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0090	23505	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0091	23505	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0092	23457	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0093	23409	1	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0094	23505	1	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0095	23457	1	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0096	23073	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0097	23170	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0098	23169	1	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0099	23169	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0100	23169	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0101	23073	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0102	23073	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0103	23218	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0104	23025	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0105	23409	1	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0106	20095	1	0	0	1	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0107	23409	1	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0108	23409	1	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0109	23121	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0110	15537	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0111	23604	1	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0112	23121	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929