JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC4_chr3_195741771_195816929	0/0	c0163	15519	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0164	15999	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0165	16206	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0166	23361	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0167	21393	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0168	20913	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0169	21009	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0170	15105	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0171	15726	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0172	15442	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0173	12462	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0174	15441	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0175	15729	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0176	15489	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0177	15102	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0178	23070	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0179	19038	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0180	17070	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0181	17070	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0182	17118	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0183	17022	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0184	21246	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0185	17262	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0186	16638	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0187	17070	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0188	17118	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0189	31375	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0190	19566	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0191	19566	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0192	17884	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0193	19758	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0194	22542	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0195	17072	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0196	17022	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0197	18357	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0198	15381	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0199	18645	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0200	20245	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0201	21141	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC5AC_chr11_1152953_1206138	0/1	c0001	16965	31	1	6	15	1	7	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0002	17229	24	3	6	11	0	4	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0003	16965	21	0	3	17	1	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0004	16965	18	9	9	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0005	17229	10	1	7	1	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0006	17229	8	8	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0007	17229	7	2	5	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0008	19422	7	0	0	7	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0009	16989	5	1	1	0	3	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0010	16965	5	0	3	1	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0011	16965	4	0	4	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138