JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC5AC_chr11_1152953_1206138	0/0	c0012	17229	4	0	0	4	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0013	16965	4	4	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0014	17229	4	0	0	3	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0015	17229	4	4	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0016	16965	3	0	0	3	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0017	16965	3	0	0	3	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0018	17229	3	0	0	3	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0019	18978	3	3	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0020	17859	3	0	3	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0021	17229	3	0	0	3	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0022	19422	3	0	0	3	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0023	16965	3	3	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0024	16965	2	0	0	2	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0025	16965	2	0	0	0	0	2	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0026	16965	2	0	0	2	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0027	16965	2	0	0	2	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0028	16965	2	0	0	0	0	2	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0029	18978	2	0	0	0	2	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0030	16965	2	1	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0031	17229	2	0	2	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0032	17229	2	2	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0033	17229	2	1	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0034	17229	2	1	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0035	17229	2	0	0	0	2	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0036	17229	2	2	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0037	17229	2	1	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0038	17229	2	0	1	0	1	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0039	18978	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0040	15918	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0041	15918	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0042	17229	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0043	16965	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0044	16965	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0045	16965	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0046	16965	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0047	16965	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0048	16965	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0049	16869	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0050	16965	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0051	17229	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0052	16965	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0053	16965	1	0	0	0	1	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0054	16965	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0055	16965	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0056	16965	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0057	16965	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0058	16869	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0059	16965	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0060	16965	1	0	0	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	c0061	16965	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138