JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANTKMT_chr16_716146_727590	0/1	c0001	708	204	45	41	72	6	39	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	1/0	c0002	708	155	23	34	83	7	7	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	c0003	708	15	14	1	0	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	c0004	708	12	12	0	0	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	c0005	708	1	1	0	0	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	c0006	708	1	0	0	0	1	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	c0007	708	1	1	0	0	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	c0008	708	1	0	0	1	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	c0009	699	1	0	0	1	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	c0010	708	1	0	0	1	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTXR1_chr2_69008179_69254327	1/1	c0001	1695	169	60	28	59	6	14	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	c0002	1695	16	0	0	14	0	2	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	c0003	1695	13	12	1	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	c0004	1695	3	1	2	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	c0005	1695	1	0	0	1	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	c0006	1695	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	c0007	1695	1	0	1	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	c0008	1695	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	c0009	1695	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR2_chr4_79896146_80078229	0/1	c0001	1467	193	42	31	85	4	30	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	1/0	c0002	1467	53	22	12	7	4	7	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	c0003	1467	11	3	3	4	0	1	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	c0004	1467	4	4	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	c0005	1467	3	3	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	c0006	1467	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	c0007	1467	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	c0008	1467	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	c0009	1467	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXRL_chr10_46281997_46335129	1/0	c0001	1896	97	10	7	63	5	11	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0002	1896	41	17	8	11	1	4	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0003	1896	34	8	1	19	2	4	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0004	1896	32	5	4	11	1	11	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0005	1896	30	3	17	1	5	4	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0006	1896	26	1	10	14	1	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0007	1914	11	9	2	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0008	1896	10	0	2	8	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0009	1896	10	1	7	0	1	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0010	1896	10	7	0	1	1	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0011	1896	8	2	1	3	0	2	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0012	1896	7	1	4	0	1	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0013	1896	5	0	0	5	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0014	1896	5	2	2	0	0	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0015	1896	5	5	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0016	1896	4	4	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0017	1896	3	3	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0018	1896	3	0	1	0	0	2	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0019	1896	2	0	0	0	0	2	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0020	1896	2	0	0	2	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0021	1896	2	1	1	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0022	1896	2	2	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129