JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC5B_chr11_1218066_1267172	0/0	c0192	17266	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0193	17281	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0194	17281	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0195	17281	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0196	17281	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0197	17281	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0198	17281	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0199	17281	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0200	17281	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0201	17281	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0202	17281	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0203	17281	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0204	17281	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	c0205	17281	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC6_chr11_1007823_1041718	0/0	c0001	16101	30	0	9	20	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0002	17781	21	0	4	12	0	5	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0003	16605	18	0	3	12	1	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0004	16101	12	2	3	5	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0005	14586	9	1	5	0	2	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0006	16101	9	9	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0007	16101	7	0	6	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0008	16101	7	0	3	4	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0009	15090	7	0	0	7	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/1	c0010	18288	7	0	0	5	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0011	17781	6	0	0	5	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0012	16101	5	0	4	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0013	18288	5	0	0	5	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0014	18795	5	0	3	0	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0015	15585	5	2	3	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0016	15585	5	5	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0017	16599	4	3	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0018	16101	4	0	4	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0019	14586	4	0	1	0	2	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0020	19971	4	0	0	4	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0021	18288	4	4	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0022	18285	4	4	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0023	15594	3	3	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0024	16101	3	0	2	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0025	18288	3	0	0	3	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0026	14922	3	0	2	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0027	16605	3	0	0	3	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0028	16605	3	0	0	3	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0029	16101	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0030	16101	2	0	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0031	16101	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0032	16101	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0033	16101	2	0	0	0	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0034	12393	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0035	16101	2	0	1	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0036	16101	2	0	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718