JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC6_chr11_1007823_1041718	0/0	c0037	16101	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0038	15594	2	0	0	0	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0039	16101	2	0	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0040	16101	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0041	16101	2	0	0	1	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0042	16101	2	0	1	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0043	16101	2	0	0	0	2	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0044	16101	2	0	1	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0045	16101	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0046	16437	2	1	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0047	16098	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0048	18288	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0049	18288	2	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0050	18288	2	0	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0051	19971	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0052	17781	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0053	14076	2	0	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0054	17781	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0055	18288	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0056	15063	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0057	15585	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0058	16605	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0059	16599	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0060	16599	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0061	15594	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0062	16101	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0063	16101	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0064	17781	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0065	17781	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0066	17781	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0067	14583	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0068	18288	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0069	16101	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0070	16101	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0071	16101	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0072	14583	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0073	16101	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0074	16101	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0075	16101	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0076	16101	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0077	16101	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0078	16101	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0079	16101	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0080	16101	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0081	16101	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0082	16101	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0083	16101	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0084	16101	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0085	16101	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0086	16605	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718