JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC6_chr11_1007823_1041718	0/0	c0187	18795	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0188	18288	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0189	18288	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0190	17781	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0191	18288	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0192	17781	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0193	18288	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0194	14586	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0195	18288	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0196	15585	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0197	15585	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0198	12537	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0199	15063	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0200	15063	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0201	16599	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0202	18285	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0203	15747	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	c0204	15747	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC7_chr4_70467197_70487997	1/1	c0001	1134	205	46	40	88	6	23	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0002	1134	135	22	15	74	6	18	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0003	1065	69	2	9	50	4	4	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0004	1134	14	11	3	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0005	1065	3	3	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0006	1065	2	2	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0007	1134	2	2	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0008	1134	2	2	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0009	1134	1	0	0	0	0	1	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0010	1134	1	0	1	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0011	1134	1	1	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	c0012	1134	1	1	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUCL1_chr12_54849516_54863387	0/1	c0001	273	410	82	75	197	15	40	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	1/0	c0002	273	12	8	2	0	1	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	c0003	273	2	2	0	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	c0004	273	2	1	0	1	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	c0005	273	1	1	0	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	c0006	273	1	0	1	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	c0007	249	1	0	1	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	c0008	273	1	0	1	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL3_chr6_30935973_30959221	0/1	c0001	4182	190	25	30	101	7	26	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0002	4182	70	1	21	33	4	11	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0003	4182	46	21	14	8	2	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0004	4182	23	9	4	7	1	2	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0005	4182	21	4	5	11	0	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0006	4125	19	2	0	17	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0007	4182	12	4	4	1	2	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0008	4182	11	0	0	9	0	2	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0009	4182	8	6	0	2	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0010	4182	8	8	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0011	4182	8	5	1	0	0	2	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0012	4182	7	0	0	6	0	1	copy fasta	MUCL3	chr6	30935973	30959221