JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUCL3_chr6_30935973_30959221	0/0	c0013	4182	3	3	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0014	4182	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0015	4182	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0016	4182	1	0	0	0	0	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0017	4182	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0018	4182	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0019	4182	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0020	4182	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0021	4308	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0022	4182	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0023	4182	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0024	4182	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0025	4182	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0026	4182	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0027	4182	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	c0028	4182	1	0	1	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUL1_chr1_20494448_20513151	1/0	c0001	1059	414	85	69	206	15	38	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/1	c0002	1059	20	3	6	1	3	6	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	c0003	1059	3	0	2	0	0	1	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	c0004	1059	2	2	0	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	c0005	1059	1	1	0	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	c0006	1059	1	1	0	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	c0007	1059	1	0	1	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	c0008	1059	1	0	0	1	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	c0009	1059	1	0	0	0	0	1	copy fasta	MUL1	chr1	20494448	20513151
MUS81_chr11_65855433_65871439	1/0	c0001	1656	224	57	41	109	2	14	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/1	c0002	1656	137	14	26	63	6	27	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0003	1656	5	5	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0004	1656	5	5	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0005	1656	4	4	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0006	1656	4	0	0	4	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0007	1656	3	0	0	3	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0008	1656	2	0	2	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0009	1656	2	0	0	2	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0010	1656	2	0	1	0	0	1	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0011	1656	2	2	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0012	1656	1	0	1	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0013	1656	1	1	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0014	1656	1	0	1	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	c0015	1656	1	0	0	1	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUSK_chr9_110663791_110811558	1/1	c0001	2610	175	37	46	58	9	23	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0002	2610	33	5	9	15	0	4	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0003	2610	23	0	0	19	2	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0004	2610	21	16	0	4	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0005	2610	18	0	2	11	1	4	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0006	2610	11	0	0	11	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0007	2610	10	0	0	8	0	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0008	2610	8	0	2	6	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0009	2610	4	0	0	3	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0010	2610	3	2	1	0	0	0	copy fasta	MUSK	chr9	110663791	110811558