JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUSK_chr9_110663791_110811558	0/0	c0011	2610	2	2	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0012	2610	2	1	0	0	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0013	2610	2	0	0	0	0	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0014	2610	1	0	0	0	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0015	2610	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0016	2610	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0017	2610	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0018	2610	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0019	2610	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0020	2610	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0021	2610	1	0	1	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0022	2610	1	0	0	0	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0023	2610	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0024	2610	1	0	0	0	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0025	2610	1	0	0	0	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0026	2610	1	0	1	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	c0027	2610	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSTN1_chr3_52828121_52840019	0/1	c0001	249	355	73	78	159	14	30	copy fasta	MUSTN1	chr3	52828121	52840019
MUSTN1_chr3_52828121_52840019	1/0	c0002	249	18	15	2	0	0	0	copy fasta	MUSTN1	chr3	52828121	52840019
MUSTN1_chr3_52828121_52840019	0/0	c0003	249	14	0	0	2	0	12	copy fasta	MUSTN1	chr3	52828121	52840019
MUSTN1_chr3_52828121_52840019	0/0	c0004	249	1	0	0	1	0	0	copy fasta	MUSTN1	chr3	52828121	52840019
MUTYH_chr1_45324242_45344970	1/0	c0001	1566	211	61	34	86	7	22	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0002	1566	151	26	35	76	5	9	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0003	1566	10	0	0	10	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/1	c0004	1566	9	0	1	0	5	2	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0005	1566	6	6	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0006	1566	3	1	0	0	0	2	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0007	1566	2	0	2	0	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0008	1566	2	0	0	2	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0009	1566	1	1	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0010	1566	1	0	0	0	1	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0011	1566	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0012	1566	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0013	1566	1	1	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0014	1566	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0015	1566	1	0	0	0	0	1	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	c0016	1566	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45345440	1/0	c0001	1650	213	61	34	88	7	22	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0002	1650	151	26	35	76	5	9	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0003	1650	10	0	0	10	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/1	c0004	1650	9	0	1	0	5	2	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0005	1650	6	6	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0006	1650	3	1	0	0	0	2	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0007	1650	2	0	2	0	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0008	1650	2	0	0	2	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0009	1650	1	1	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0010	1650	1	0	0	0	1	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0011	1650	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0012	1650	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0013	1650	1	1	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45345440