JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANTXRL_chr10_46281997_46335129	0/0	c0023	1896	2	0	0	2	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0024	1914	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0025	1896	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0026	1896	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0027	1896	1	0	0	1	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0028	1896	1	0	0	1	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0029	1896	1	0	0	0	0	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0030	1896	1	0	0	0	0	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0031	1914	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0032	1896	1	0	1	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0033	1896	1	0	0	1	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0034	1896	1	0	0	1	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0035	1896	1	0	0	0	0	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0036	1896	1	0	1	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0037	1896	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0038	1896	1	0	1	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0039	1896	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0040	1896	1	0	0	0	0	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	c0041	1914	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANXA10_chr4_168087537_168192736	0/0	c0001	975	128	56	27	26	4	15	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	1/0	c0002	975	110	20	17	56	4	12	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/1	c0003	975	25	8	7	3	3	3	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0004	975	5	5	0	0	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0005	975	4	0	0	4	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0006	975	3	0	1	0	0	2	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0007	975	2	1	1	0	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0008	975	2	0	0	2	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0009	975	2	0	1	0	1	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0010	975	1	0	0	1	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0011	975	1	1	0	0	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	c0012	975	1	1	0	0	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA11_chr10_80145889_80210537	1/1	c0001	1518	172	66	24	58	7	15	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0002	1518	156	12	30	85	7	22	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0003	1518	26	2	10	8	0	6	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0004	1518	14	13	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0005	1518	2	0	2	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0006	1518	2	0	0	0	1	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0007	1518	2	0	0	2	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0008	1518	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0009	1518	1	0	0	0	0	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0010	1518	1	1	0	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0011	1518	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0012	1518	1	0	0	0	1	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0013	1518	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0014	1518	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0015	1518	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0016	1518	1	0	0	0	0	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0017	1518	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0018	1518	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	c0019	1518	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537