JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUTYH_chr1_45324242_45345440	0/0	c0014	1650	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0015	1650	1	0	0	0	0	1	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	c0016	1650	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MVB12A_chr19_17415047_17430332	1/1	c0001	822	388	92	72	169	16	37	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	c0002	822	4	1	3	0	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	c0003	822	2	1	0	1	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	c0004	822	2	0	1	0	0	1	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	c0005	822	2	0	0	2	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	c0006	822	1	0	0	0	1	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	c0007	822	1	0	0	0	1	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12B_chr9_126321829_126512040	1/1	c0001	960	211	44	43	89	6	27	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	c0002	960	52	32	11	5	1	3	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	c0003	960	49	0	8	34	3	4	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	c0004	960	2	0	2	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	c0005	960	2	2	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	c0006	960	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	c0007	960	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVD_chr16_88646940_88668091	0/1	c0001	1203	220	22	58	110	11	18	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	1/0	c0002	1203	191	67	19	72	4	28	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0003	1203	2	1	1	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0004	1203	2	0	0	2	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0005	1203	2	0	0	2	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0006	1203	2	0	0	2	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0007	1203	2	2	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0008	1203	2	2	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0009	1203	2	2	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0010	1203	1	0	0	0	1	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0011	1203	1	1	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0012	1203	1	0	0	1	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0013	1203	1	0	0	0	0	1	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0014	1203	1	1	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0015	1203	1	0	0	1	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0016	1203	1	0	0	1	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0017	1203	1	0	0	0	0	1	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	c0018	1203	1	0	0	1	0	0	copy fasta	MVD	chr16	88646940	88668091
MVK_chr12_109568794_109603125	1/1	c0001	1191	276	52	49	130	9	34	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0002	1191	74	20	12	30	6	6	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0003	1191	12	5	0	5	0	2	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0004	1191	7	4	2	0	1	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0005	1191	6	3	3	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0006	1191	2	2	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0007	1191	1	0	0	1	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0008	1191	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0009	1191	1	0	0	1	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0010	1191	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	MVK	chr12	109568794	109603125
MVP_chr16_29815462_29853021	1/1	c0001	2682	188	54	29	71	5	27	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0002	2682	17	5	1	11	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0003	2682	6	0	0	6	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0004	2682	4	4	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021