JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MVP_chr16_29815462_29853021	0/0	c0005	2682	2	1	0	0	0	1	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0006	2682	2	2	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0007	2682	1	0	0	0	1	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0008	2682	1	0	0	1	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0009	2682	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0010	2682	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0011	2670	1	0	1	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0012	2682	1	0	1	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0013	2682	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0014	2682	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0015	2682	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0016	2682	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	c0017	2682	1	0	0	1	0	0	copy fasta	MVP	chr16	29815462	29853021
MX1_chr21_41421239_41464212	0/0	c0001	1989	80	12	13	42	3	10	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0002	1989	77	13	8	49	2	5	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	1/0	c0003	1989	57	3	10	39	0	4	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/1	c0004	1989	53	6	25	2	6	13	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0005	1989	35	27	6	0	1	1	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0006	1989	29	2	0	25	0	2	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0007	1989	16	1	1	14	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0008	1989	10	9	1	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0009	1989	8	0	7	1	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0010	1989	5	0	0	2	0	3	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0011	1989	4	2	0	2	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0012	1989	3	3	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0013	1989	3	3	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0014	1989	2	2	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0015	1989	2	2	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0016	1989	2	0	1	0	0	1	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0017	1989	2	1	0	0	0	1	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0018	1989	2	2	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0019	1989	2	0	2	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0020	1989	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0021	1989	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0022	1989	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0023	1989	1	0	0	1	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0024	1989	1	0	0	1	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0025	1989	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0026	1989	1	0	0	1	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0027	1989	1	0	0	1	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0028	1989	1	0	0	1	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0029	1989	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0030	1989	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0031	1989	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0032	1989	1	0	0	0	1	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0033	1989	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0034	1989	1	0	0	1	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	c0035	1989	1	0	0	0	1	0	copy fasta	MX1	chr21	41421239	41464212
MX2_chr21_41357027_41414393	1/1	c0001	2148	279	52	63	107	17	38	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0002	2148	35	5	1	25	1	3	copy fasta	MX2	chr21	41357027	41414393