JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MX2_chr21_41357027_41414393	0/0	c0003	2148	19	11	1	6	0	1	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0004	2148	12	5	0	7	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0005	2148	4	2	2	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0006	2148	2	1	1	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0007	2148	2	2	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0008	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0009	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0010	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0011	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0012	2148	1	0	1	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0013	2148	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0014	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0015	2148	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0016	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0017	2148	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0018	2148	1	0	1	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0019	2148	1	0	0	0	0	1	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0020	2148	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0021	2148	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0022	2148	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0023	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0024	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0025	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0026	2148	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0027	2148	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	c0028	2148	1	0	0	0	0	1	copy fasta	MX2	chr21	41357027	41414393
MXD1_chr2_69910109_69947945	0/1	c0001	666	248	78	29	111	7	22	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	1/0	c0002	666	162	16	45	81	5	14	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	c0003	666	3	1	0	2	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	c0004	666	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	c0005	666	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	c0006	666	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	c0007	666	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	c0008	666	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD3_chr5_177302210_177316898	1/1	c0001	621	322	63	53	163	7	34	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	c0002	621	74	32	18	3	9	12	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	c0003	621	6	4	0	0	2	0	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	c0004	621	1	0	1	0	0	0	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	c0005	621	1	1	0	0	0	0	copy fasta	MXD3	chr5	177302210	177316898
MXD4_chr4_2242432_2267109	1/1	c0001	630	348	97	66	148	7	28	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	c0002	630	17	1	4	9	1	2	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	c0003	630	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXI1_chr10_110202605_110292365	1/1	c0001	888	341	68	57	169	9	36	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	c0002	888	11	0	5	0	1	5	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	c0003	888	9	9	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	c0004	888	7	0	0	6	0	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	c0005	888	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	c0006	888	1	1	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	c0007	888	1	1	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	c0008	888	1	1	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365