JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MXRA5_chrX_3303565_3351652	0/1	c0001	8487	95	8	18	54	7	7	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	1/0	c0002	8487	67	5	17	31	2	11	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0003	8487	48	10	6	25	1	6	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0004	8487	8	7	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0005	8487	6	6	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0006	8487	5	5	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0007	8487	4	0	0	4	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0008	8487	3	1	2	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0009	8487	3	3	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0010	8487	2	0	2	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0011	8487	2	2	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0012	8487	2	2	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0013	8487	2	2	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0014	8487	2	0	0	2	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0015	8487	2	1	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0016	8487	2	2	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0017	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0018	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0019	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0020	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0021	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0022	8487	1	0	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0023	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0024	8487	1	0	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0025	8487	1	0	0	0	0	1	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0026	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0027	8487	1	0	0	0	0	1	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0028	8488	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0029	8487	1	0	0	0	1	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0030	8487	1	0	0	0	0	1	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0031	8487	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0032	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0033	8487	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0034	8487	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0035	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0036	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0037	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0038	8487	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0039	8487	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0040	8487	1	0	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0041	8487	1	0	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0042	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0043	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0044	8487	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0045	8488	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0046	8487	1	0	0	0	0	1	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	c0047	8488	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA7_chr17_76674566_76715965	1/0	c0001	513	342	67	67	154	14	39	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/1	c0002	513	59	21	4	24	2	7	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	c0003	513	14	12	0	2	0	0	copy fasta	MXRA7	chr17	76674566	76715965