JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MXRA7_chr17_76674566_76715965	0/0	c0004	513	1	0	1	0	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA8_chr1_1347691_1363555	1/1	c0001	1329	285	51	49	125	15	43	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0002	1329	25	24	1	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0003	1329	16	13	1	0	1	1	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0004	1329	3	3	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0005	1329	1	1	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0006	1329	1	0	0	1	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0007	1329	1	0	1	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0008	1329	1	0	0	0	0	1	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0009	1329	1	0	0	1	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0010	1329	1	0	0	1	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0011	1329	1	0	1	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0012	1329	1	0	0	0	0	1	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	c0013	1329	1	0	1	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MYADML2_chr17_81934645_81952233	0/0	c0001	924	155	31	33	67	10	14	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	1/1	c0002	924	147	27	26	72	4	16	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0003	924	30	23	1	2	0	4	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0004	924	8	0	0	8	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0005	924	8	1	2	0	0	5	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0006	924	5	0	1	0	3	1	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0007	924	4	4	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0008	924	2	1	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0009	924	2	0	0	2	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0010	924	2	0	0	0	1	1	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0011	924	2	2	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0012	924	2	0	0	2	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0013	924	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0014	924	1	0	0	1	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0015	924	1	1	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0016	924	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0017	924	1	1	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0018	924	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0019	924	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0020	924	1	0	0	0	0	1	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	c0021	924	1	1	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADM_chr19_53862883_53881435	1/1	c0001	969	362	87	71	152	8	42	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	c0002	969	7	0	0	6	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	c0003	969	3	2	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	c0004	969	2	0	0	1	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	c0005	969	1	0	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	c0006	969	1	0	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	c0007	969	1	0	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	c0008	969	1	1	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYBBP1A_chr17_4533904_4560384	0/1	c0001	3987	165	13	38	86	9	18	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	c0002	3987	38	0	9	22	3	4	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	c0003	3987	31	0	6	25	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	c0004	3987	31	0	7	17	1	6	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	c0005	3987	18	0	2	14	0	2	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	c0006	3987	17	0	0	17	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	c0007	3987	16	0	0	16	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384