JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYBL2_chr20_43662114_43721482	0/0	c0004	2103	25	2	2	19	0	2	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0005	2103	10	7	3	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0006	2103	6	5	1	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0007	2103	6	5	1	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0008	2103	3	3	0	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0009	2103	2	0	0	2	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0010	2103	1	0	0	1	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0011	2103	1	0	0	1	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0012	2103	1	0	0	1	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0013	2103	1	0	0	1	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0014	2103	1	0	1	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0015	2103	1	1	0	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0016	2103	1	1	0	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	c0017	2103	1	1	0	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBPC1_chr12_101589971_101691028	0/1	c0001	3516	164	30	27	84	4	18	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0002	3516	73	8	7	48	2	8	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0003	3516	35	2	4	20	2	7	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0004	3516	35	16	4	14	0	1	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0005	3516	19	17	2	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0006	3516	8	2	2	0	1	3	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0007	3516	5	5	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0008	3516	4	0	1	0	0	3	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0009	3516	2	0	0	0	1	1	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0010	3516	2	2	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0011	3516	2	0	0	2	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0012	3516	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0013	3516	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0014	3516	1	0	0	0	0	1	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0015	3516	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	1/0	c0016	3516	1	0	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0017	3516	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0018	3516	1	0	0	1	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0019	3516	1	0	1	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0020	3516	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0021	3516	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	c0022	3516	1	0	0	1	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC2_chr19_50427892_50471321	0/1	c0001	3426	139	55	21	46	4	12	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	1/0	c0002	3426	77	2	20	31	5	18	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0003	3426	50	0	20	17	4	9	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0004	3426	40	3	2	35	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0005	3426	11	0	10	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0006	3426	6	5	1	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0007	3426	5	5	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0008	3426	5	0	0	5	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0009	3426	4	2	0	0	0	2	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0010	3426	4	0	4	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0011	3426	3	3	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0012	3426	3	0	0	3	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0013	3426	3	2	1	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0014	3426	2	2	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321