JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYBPC2_chr19_50427892_50471321	0/0	c0015	3426	2	2	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0016	3426	2	0	0	2	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0017	3426	2	2	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0018	3426	2	0	0	2	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0019	3426	2	0	0	2	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0020	3426	2	2	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0021	3426	2	0	1	0	1	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0022	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0023	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0024	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0025	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0026	3426	1	0	1	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0027	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0028	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0029	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0030	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0031	3426	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0032	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0033	3426	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0034	3426	1	0	0	0	1	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0035	3426	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0036	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0037	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0038	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0039	3426	1	0	0	0	1	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0040	3426	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0041	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0042	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0043	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0044	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0045	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0046	3426	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0047	3426	1	0	1	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0048	3426	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0049	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0050	3426	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	c0051	3426	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC3_chr11_47326406_47357702	0/0	c0001	3825	150	37	8	88	2	15	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	1/0	c0002	3825	133	29	31	44	8	20	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0003	3825	20	0	1	14	3	2	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/1	c0004	3825	11	0	8	2	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0005	3825	10	0	6	0	2	2	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0006	3825	7	0	3	0	2	2	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0007	3825	7	6	1	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0008	3825	5	0	4	0	0	1	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0009	3825	3	0	1	2	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0010	3825	3	3	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0011	3825	2	1	0	0	0	1	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0012	3825	2	0	0	2	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0013	3825	2	2	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702