JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYBPC3_chr11_47326406_47357702	0/0	c0014	3825	2	0	2	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0015	3825	1	0	1	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0016	3825	1	0	0	0	0	1	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0017	3825	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0018	3825	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0019	3825	1	0	1	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0020	3825	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0021	3825	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0022	3825	1	0	1	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0023	3825	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0024	3825	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0025	3825	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0026	3825	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0027	3814	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0028	3825	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0029	3825	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0030	3825	1	0	0	0	1	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	c0031	3825	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPHL_chr1_109287365_109312011	0/1	c0001	1065	343	37	67	184	17	37	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0002	1065	32	16	3	5	0	8	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0003	1065	13	11	0	0	1	1	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	1/0	c0004	1065	13	12	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0005	1065	9	9	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0006	1065	6	6	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0007	1065	4	1	0	3	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0008	1065	2	2	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0009	1065	2	0	1	0	0	1	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0010	1065	2	2	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0011	1065	1	0	1	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0012	1065	1	0	0	1	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0013	1065	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0014	1065	1	0	0	1	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0015	1065	1	0	0	1	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0016	1065	1	0	0	1	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0017	1065	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0018	1065	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0019	1065	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	c0020	1065	1	0	0	0	0	1	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPH_chr1_203162811_203180826	1/1	c0001	1434	227	26	55	93	15	36	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0002	1434	115	50	15	44	2	4	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0003	1434	79	12	5	59	0	3	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0004	1434	19	3	4	10	1	1	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0005	1434	5	0	3	0	0	2	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0006	1434	3	0	0	3	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0007	1434	2	0	0	2	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0008	1434	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0009	1434	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0010	1434	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0011	1434	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0012	1434	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826