Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCB9_chr12_122923992_122971463	0/0	c0005	2301	2	0	2	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0006	2301	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0007	2301	1	0	0	0	0	1	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0008	2301	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0009	2301	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0010	2301	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0011	2301	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0012	2301	1	0	0	0	0	1	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0013	2301	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCC10_chr6_43422541_43455427	1/1	c0001	4479	224	51	47	91	8	25	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0002	4479	37	0	8	18	0	11	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0003	4479	33	11	9	7	1	5	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0004	4479	12	12	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0005	4479	6	6	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0006	4479	6	6	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0007	4479	4	4	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0008	4479	3	0	1	1	1	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0009	4479	3	0	0	3	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0010	4479	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0011	4479	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0012	4479	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0013	4479	1	0	1	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0014	4479	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0015	4479	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0016	4479	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0017	4479	1	0	0	0	0	1	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0018	4479	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0019	4528	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0020	4479	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0021	4479	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0022	4479	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	c0023	4479	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC11_chr16_48160773_48252539	1/0	c0001	4149	40	19	7	6	1	6	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/1	c0002	4149	13	0	1	6	0	5	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0003	4149	13	4	7	2	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0004	4149	8	1	2	5	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0005	4149	7	1	5	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0006	4149	6	0	2	3	1	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0007	4149	6	6	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0008	4149	6	6	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0009	4149	5	5	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0010	4149	4	3	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0011	4149	4	4	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0012	4149	4	4	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0013	4149	3	0	3	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0014	4149	3	3	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0015	4149	3	2	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0016	4149	3	3	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0017	4149	2	0	1	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0018	4149	2	2	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539