JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANXA13_chr8_123675794_123742393	0/0	c0001	951	181	64	39	51	5	22	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	1/0	c0002	951	96	3	18	63	4	7	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/1	c0003	951	67	15	14	34	0	3	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0004	951	11	3	1	5	1	1	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0005	951	8	4	3	0	1	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0006	951	3	0	1	0	1	1	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0007	951	2	0	0	2	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0008	951	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0009	951	1	0	0	1	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0010	951	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0011	951	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0012	951	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	c0013	951	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA1_chr9_73146865_73175393	1/1	c0001	1041	331	63	70	150	15	31	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	c0002	1041	89	28	9	38	3	11	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	c0003	1041	2	2	0	0	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	c0004	1041	1	0	1	0	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	c0005	1041	1	0	0	0	0	1	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	c0007	1041	1	0	0	0	0	1	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	c0008	1041	1	0	0	1	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	c0009	1041	1	0	0	1	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA2R_chr5_43034371_43045319	1/1	c0001	582	247	50	32	116	9	38	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	c0002	582	45	7	27	0	5	6	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	c0003	582	3	2	1	0	0	0	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	c0004	582	1	1	0	0	0	0	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2_chr15_60342151_60402986	1/1	c0001	1020	295	74	40	132	9	38	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	c0002	1020	20	1	14	0	3	2	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	c0003	1020	14	0	13	0	0	1	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	c0004	1020	2	2	0	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	c0005	1020	1	0	1	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	c0006	1020	1	1	0	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	c0007	1020	1	0	0	0	0	1	copy fasta	ANXA2	chr15	60342151	60402986
ANXA3_chr4_78546770_78615447	1/1	c0001	972	287	58	48	143	6	30	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0002	972	23	23	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0003	972	6	6	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0004	972	4	4	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0005	972	2	2	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0006	972	1	0	0	1	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0007	972	1	0	0	1	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0008	972	1	0	0	0	0	1	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0009	972	1	0	0	1	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0010	972	1	1	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0011	972	1	1	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0012	972	1	1	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	c0013	972	1	0	0	0	0	1	copy fasta	ANXA3	chr4	78546770	78615447
ANXA4_chr2_69737134_69832112	1/1	c0001	966	216	37	30	111	10	26	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	c0002	966	75	25	15	29	2	4	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	c0003	966	49	12	21	16	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	c0004	966	4	4	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112