JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYBPH_chr1_203162811_203180826	0/0	c0013	1434	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0014	1434	1	0	1	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0015	1434	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0016	1434	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0017	1434	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0018	1434	1	0	1	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0019	1434	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0020	1434	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	c0021	1434	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYB_chr6_135176308_135224172	1/1	c0001	2286	368	71	58	182	15	40	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0002	2286	5	5	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0003	2286	4	4	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0004	2286	4	0	2	0	1	1	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0005	2286	4	2	2	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0006	2286	3	3	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0007	2286	3	3	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0008	2286	2	1	1	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0009	2286	1	0	0	1	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0010	2286	1	0	1	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0011	2286	1	1	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0012	2286	1	1	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0013	2286	1	0	0	1	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0014	2286	1	1	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	c0015	2286	1	0	0	0	0	1	copy fasta	MYB	chr6	135176308	135224172
MYCBP2_chr13_77039657_77332094	0/0	c0001	14037	114	14	25	58	3	14	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/1	c0002	14037	59	1	2	42	2	11	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	1/0	c0003	14037	38	30	7	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0004	14037	22	5	5	11	1	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0005	14037	19	0	1	17	1	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0006	14037	15	6	8	0	1	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0007	14037	8	7	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0008	14037	8	7	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0009	14037	7	0	0	7	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0010	14037	3	0	0	3	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0011	14037	3	0	0	3	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0012	14037	2	0	2	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0013	14037	2	0	0	2	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0014	14037	2	0	0	2	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0015	14037	2	0	0	2	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0016	14037	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0017	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0018	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0019	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0020	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0021	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0022	14037	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0023	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0024	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0025	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0026	14037	1	0	0	0	0	1	copy fasta	MYCBP2	chr13	77039657	77332094