JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYCBP2_chr13_77039657_77332094	0/0	c0027	14037	1	0	0	0	0	1	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0028	14037	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0029	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0030	14037	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0031	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0032	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0033	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0034	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0035	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0036	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0037	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0038	14037	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0039	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0040	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0041	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0042	14037	1	0	0	0	0	1	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0043	14037	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0044	14037	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	c0045	14037	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBPAP_chr17_50503439_50536501	0/0	c0001	2826	174	14	44	86	10	20	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	1/0	c0002	2826	58	3	20	19	5	10	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0003	2826	32	20	3	4	0	5	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0004	2826	19	15	3	0	1	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0005	2826	11	11	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/1	c0006	2826	10	1	2	4	0	2	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0007	2826	8	0	2	6	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0008	2826	5	3	2	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0009	2826	5	5	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0010	2826	5	0	0	5	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0011	2826	4	4	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0012	2826	3	0	2	0	0	1	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0013	2826	3	3	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0014	2826	3	0	0	0	0	3	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0015	2826	3	3	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0016	2826	3	0	0	0	0	3	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0017	2826	2	0	1	0	0	1	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0018	2826	2	2	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0019	2826	2	0	0	2	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0020	2826	2	0	0	0	1	1	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0021	2826	2	2	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0022	2826	2	1	1	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0023	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0024	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0025	2826	1	0	0	0	1	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0026	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0027	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0028	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0029	2826	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0030	2826	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0031	2826	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501