JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYCBPAP_chr17_50503439_50536501	0/0	c0032	2826	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0033	2826	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0034	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0035	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0036	2826	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0037	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0038	2826	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0039	2826	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	c0040	2826	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBP_chr1_38857493_38878348	1/1	c0001	312	434	92	74	206	16	44	copy fasta	MYCBP	chr1	38857493	38878348
MYCL_chr1_39890428_39906917	0/1	c0001	1095	383	93	59	187	12	31	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	1/0	c0002	1095	22	1	6	0	5	9	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	c0003	1095	4	0	0	3	1	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	c0004	1095	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	c0005	1095	1	0	0	1	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	c0006	1095	1	0	1	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	c0007	1095	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	c0008	1095	1	0	0	1	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCN_chr2_15935550_15952004	1/1	c0001	1395	423	82	71	205	18	45	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	c0002	1395	4	4	0	0	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	c0003	1395	2	0	0	2	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	c0004	1395	2	2	0	0	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	c0005	1395	1	1	0	0	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	c0006	1395	1	0	1	0	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	c0007	1395	1	0	0	1	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	c0008	1395	1	0	0	0	0	1	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	c0009	1395	1	1	0	0	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCT1_chr6_152692897_152729569	1/1	c0001	708	336	74	54	165	7	34	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0002	704	50	7	6	36	0	1	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0003	708	46	3	17	20	3	3	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0004	708	3	0	0	3	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0005	708	2	0	0	2	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0006	708	2	0	2	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0007	708	2	2	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0008	704	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0009	708	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	c0010	708	1	0	1	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYC_chr8_127731231_127747951	1/1	c0001	1365	380	72	69	174	15	48	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0002	1365	48	20	2	23	1	2	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0003	1365	4	0	4	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0004	1365	3	3	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0005	1365	2	2	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0006	1365	1	0	1	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0007	1365	1	1	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0008	1365	1	0	1	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0009	1365	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	c0010	1365	1	0	1	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYD88_chr3_38133661_38148022	1/1	c0001	891	400	87	72	188	14	37	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	c0002	891	2	0	0	2	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	c0003	891	2	2	0	0	0	0	copy fasta	MYD88	chr3	38133661	38148022