JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYD88_chr3_38133661_38148022	0/0	c0004	891	1	1	0	0	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	c0005	891	1	0	0	1	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	c0006	919	1	0	0	1	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	c0007	891	1	0	0	0	0	1	copy fasta	MYD88	chr3	38133661	38148022
MYDGF_chr19_4652545_4675342	1/1	c0001	522	286	29	74	129	15	37	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	c0002	522	85	46	3	34	2	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	c0003	522	35	17	3	13	1	1	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	c0004	522	1	0	0	1	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	c0005	522	1	0	0	1	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	c0006	522	1	1	0	0	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	c0007	522	1	1	0	0	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYEF2_chr15_48129632_48183295	0/1	c0001	1803	221	66	22	115	0	17	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	c0002	1803	31	12	12	6	0	1	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	c0003	1803	5	0	0	5	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	1/0	c0004	1803	4	2	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	c0005	1803	1	0	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	c0006	1803	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	c0007	1803	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEOV_chr11_69289155_69302287	1/1	c0001	942	181	10	51	88	13	17	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0002	942	103	47	9	40	1	6	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0003	942	69	14	2	42	1	10	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0004	942	18	4	6	3	1	4	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0005	942	13	0	2	8	0	3	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0006	942	13	13	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0007	942	4	4	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0008	942	2	2	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0009	942	1	0	0	1	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0010	942	1	0	0	0	0	1	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0011	942	1	0	1	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0012	942	1	0	1	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0013	942	1	1	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0014	942	1	0	0	0	0	1	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0015	942	1	1	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0016	942	1	1	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0017	942	1	0	0	0	0	1	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0018	942	1	1	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	c0019	942	1	0	0	0	0	1	copy fasta	MYEOV	chr11	69289155	69302287
MYF5_chr12_80711912_80724671	1/1	c0001	768	426	93	78	194	14	45	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	c0002	768	2	2	0	0	0	0	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	c0003	768	1	0	0	0	0	1	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	c0004	768	1	1	0	0	0	0	copy fasta	MYF5	chr12	80711912	80724671
MYF6_chr12_80702634_80714474	1/1	c0001	729	380	91	78	163	10	36	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	c0002	729	1	0	0	1	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	c0003	729	1	1	0	0	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYG1_chr12_53294695_53312177	0/1	c0001	1131	345	76	73	155	9	31	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	1/0	c0002	1131	9	7	1	0	0	0	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	c0003	1131	5	5	0	0	0	0	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	c0004	1131	3	1	2	0	0	0	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	c0005	1131	2	0	0	0	0	2	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	c0006	1131	1	1	0	0	0	0	copy fasta	MYG1	chr12	53294695	53312177