JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYG1_chr12_53294695_53312177	0/0	c0007	1131	1	0	0	1	0	0	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	c0008	1131	1	0	0	0	1	0	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	c0009	1131	1	0	0	0	0	1	copy fasta	MYG1	chr12	53294695	53312177
MYH10_chr17_8469224_8635725	0/1	c0001	6024	120	29	29	45	6	10	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0002	6024	93	19	25	34	4	11	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0003	6024	15	0	0	15	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	1/0	c0004	6024	9	7	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0005	6024	6	6	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0006	6024	5	0	0	5	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0007	6024	3	3	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0008	6024	3	0	0	3	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0009	6024	3	3	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0010	6024	3	0	0	0	0	3	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0011	6024	2	2	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0012	6024	2	2	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0013	6024	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0014	6024	1	0	0	1	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0015	6024	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0016	6024	1	0	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0017	6024	1	0	0	0	0	1	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0018	6024	1	0	0	0	0	1	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0019	6024	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0020	6024	1	0	0	1	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0021	6024	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	c0022	6024	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH11_chr16_15698135_15862028	0/0	c0001	5919	49	4	12	25	2	6	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0002	5919	43	4	9	8	6	16	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0003	5919	17	1	4	8	1	3	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0004	5919	16	8	3	2	1	2	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0005	5919	16	13	1	0	0	2	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0006	5919	15	14	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0007	5919	12	1	1	9	0	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0008	5919	10	0	1	9	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0009	5919	10	1	2	5	1	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0010	5919	7	0	0	6	0	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0011	5919	7	1	4	0	0	2	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0012	5919	6	0	1	0	0	5	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0013	5919	5	4	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0014	5919	5	0	0	5	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0015	5919	5	3	0	2	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0016	5919	5	0	0	5	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0017	5919	3	3	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0018	5919	3	2	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0019	5919	3	0	0	2	0	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0020	5919	3	0	0	3	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0021	5919	3	0	3	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0022	5919	3	3	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0023	5919	2	0	1	0	1	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0024	5919	2	0	0	0	1	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0025	5919	2	2	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028