JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH11_chr16_15698135_15862028	0/0	c0026	5919	2	0	0	0	2	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0027	5919	2	0	0	2	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0028	5919	2	0	2	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0029	5919	2	2	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0030	5919	2	2	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0031	5919	2	1	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0032	5919	2	2	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0033	5919	1	0	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0034	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0035	5919	1	0	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0036	5919	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0037	5919	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0038	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0039	5919	1	0	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0040	5919	1	0	0	0	0	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0041	5919	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0042	5919	1	0	0	0	1	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/1	c0043	5919	1	0	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0044	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0045	5919	1	0	0	0	0	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0046	5919	1	0	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0047	5919	1	0	0	0	0	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0048	5919	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0049	5919	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0050	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0051	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0052	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0053	5919	1	0	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0054	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0055	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0056	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0057	5919	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0058	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0059	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0060	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0061	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0062	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	c0063	5919	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH13_chr17_10295865_10378006	0/0	c0001	5817	25	0	5	17	0	3	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/1	c0002	5817	24	0	5	18	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0003	5817	24	4	12	8	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0004	5817	18	3	2	11	2	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	1/0	c0005	5817	17	4	6	2	0	4	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0006	5817	11	3	3	1	2	2	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0007	5817	11	2	1	7	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0008	5817	11	1	5	3	2	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0009	5817	10	2	0	7	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0010	5817	9	0	2	6	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0011	5817	9	3	3	2	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0012	5817	8	2	0	4	0	2	copy fasta	MYH13	chr17	10295865	10378006