JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH13_chr17_10295865_10378006	0/0	c0013	5817	7	1	0	6	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0014	5817	7	4	2	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0015	5817	7	5	0	2	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0016	5817	7	1	0	4	0	2	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0017	5817	6	1	1	2	0	2	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0018	5817	6	0	0	6	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0019	5817	6	0	0	6	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0020	5817	4	2	1	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0021	5817	4	1	2	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0022	5817	4	4	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0023	5817	4	0	0	4	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0024	5817	4	1	0	3	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0025	5817	4	0	1	0	1	2	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0026	5817	4	1	2	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0027	5817	4	0	3	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0028	5817	3	3	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0029	5817	3	0	0	3	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0030	5817	3	1	0	2	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0031	5817	3	0	3	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0032	5817	3	3	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0033	5817	3	1	0	2	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0034	5817	3	0	2	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0035	5817	2	2	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0036	5817	2	2	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0037	5817	2	2	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0038	5817	2	1	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0039	5817	2	0	0	2	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0040	5817	2	1	1	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0041	5817	2	2	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0042	5817	2	2	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0043	5817	2	0	0	2	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0044	5817	2	0	0	0	0	2	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0045	5817	2	0	0	2	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0046	5817	2	1	1	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0047	5817	2	0	2	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0048	5817	2	0	0	1	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0049	5817	2	2	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0050	5817	2	0	1	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0051	5817	2	0	0	2	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0052	5817	2	0	2	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0053	5817	2	0	1	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0054	5817	2	0	1	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0055	5817	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0056	5817	1	0	0	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0057	5817	1	0	0	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0058	5817	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0059	5817	1	0	0	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0060	5817	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0061	5817	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0062	5817	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006