JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH13_chr17_10295865_10378006	0/0	c0113	5817	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0114	5817	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0115	5817	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0116	5817	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0117	5817	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0118	5817	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0119	5817	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	c0120	5817	1	0	1	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH14_chr19_50198622_50315540	0/0	c0001	6111	35	1	11	12	1	10	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0002	6111	20	3	7	5	3	2	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0003	6111	19	0	2	12	1	4	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0004	6111	13	0	3	7	0	3	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0005	6111	12	0	2	8	0	2	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0006	6111	8	4	2	0	1	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0007	6111	8	1	2	3	0	2	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0008	6111	8	0	1	5	1	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0009	6111	7	0	5	0	1	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0010	6111	6	2	0	3	1	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0011	6111	6	5	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/1	c0012	6111	6	0	2	0	0	3	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0013	6111	5	0	2	3	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0014	6111	5	0	0	4	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0015	6111	5	0	4	0	1	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0016	6111	4	1	0	2	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0017	6111	4	0	0	4	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0018	6111	4	0	0	4	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0019	6111	3	0	1	1	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0020	6111	3	1	1	0	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0021	6111	2	2	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0022	6111	2	0	1	0	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0023	6111	2	1	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0024	6111	2	0	0	2	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0025	6111	2	1	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0026	6111	2	0	1	0	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0027	6111	2	1	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0028	6111	2	1	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0029	6111	2	2	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0030	6111	2	1	0	0	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0031	6111	2	1	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0032	6111	2	2	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0033	6111	2	2	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0034	6111	2	2	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0035	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0036	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0037	6111	1	0	0	0	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0038	6111	1	0	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0039	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0040	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0041	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0042	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540