JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANXA4_chr2_69737134_69832112	0/0	c0005	966	1	1	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	c0006	966	1	1	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA5_chr4_121662946_121701980	1/1	c0001	963	334	92	66	127	14	33	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	c0002	963	2	0	2	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	c0003	963	1	0	0	0	0	1	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	c0004	963	1	0	0	1	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA6_chr5_151095706_151162779	0/0	c0001	2022	178	76	31	46	8	17	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0002	2022	102	2	22	62	1	15	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	1/0	c0003	2022	74	19	12	27	7	8	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/1	c0004	2022	25	0	3	15	0	6	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0005	2022	7	0	0	6	0	1	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0006	2022	5	0	1	4	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0007	2022	3	0	0	3	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0008	2022	2	1	1	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0009	2022	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0010	2022	1	0	0	0	1	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0011	2022	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0012	2022	1	0	0	0	1	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0013	2022	1	0	1	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0014	2022	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0015	2022	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0016	2022	1	0	0	0	0	1	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0017	2022	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0018	2022	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0019	2022	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	c0020	2022	1	0	1	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA7_chr10_73370101_73419058	1/1	c0001	1401	170	56	30	57	6	19	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	c0002	1401	82	12	7	51	0	12	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	c0003	1401	5	0	0	5	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	c0004	1401	3	0	0	3	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	c0005	1401	1	0	1	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	c0006	1401	1	1	0	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	c0007	1401	1	1	0	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	c0008	1401	1	0	0	0	0	1	copy fasta	ANXA7	chr10	73370101	73419058
ANXA8L1_chr10_46370776_46396778	1/0	c0001	984	129	17	13	83	3	12	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0002	984	88	23	30	27	2	6	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/1	c0003	984	77	1	8	50	3	14	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0004	984	33	10	7	12	1	3	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0005	984	32	4	13	2	7	6	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0006	984	12	10	2	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0007	984	2	0	0	2	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0008	984	2	2	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0009	984	2	0	0	2	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0010	984	2	2	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0011	984	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0012	984	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0013	984	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0014	984	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0015	984	1	0	0	1	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0016	984	1	0	1	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778