JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH14_chr19_50198622_50315540	0/0	c0093	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0094	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	1/0	c0095	6111	1	0	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0096	6111	1	0	0	0	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0097	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0098	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0099	6111	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0100	6111	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0101	6111	1	0	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0102	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0103	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0104	6111	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0105	6111	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0106	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0107	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0108	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0109	6111	1	0	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0110	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0111	6111	1	0	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0112	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0113	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0114	6111	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0115	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0116	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0117	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0118	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0119	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0120	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0121	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0122	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	c0123	6111	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH15_chr3_108375368_108515596	1/0	c0001	5781	72	13	8	41	1	8	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0002	5781	66	40	14	1	1	10	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0003	5781	65	1	12	47	0	5	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0004	5781	36	9	18	0	5	4	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/1	c0005	5781	12	0	3	0	3	5	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0006	5781	12	5	5	0	0	2	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0007	5781	5	4	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0008	5781	5	5	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0009	5781	5	5	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0010	5781	4	3	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0011	5781	3	3	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0012	5781	2	0	0	2	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0013	5781	2	0	0	2	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0014	5781	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0015	5781	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0016	5781	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0017	5781	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0018	5781	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0019	5781	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596