JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH15_chr3_108375368_108515596	0/0	c0020	5781	1	0	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0021	5781	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0022	5781	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0023	5781	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0024	5781	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0025	5781	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0026	5781	1	0	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0027	5781	1	0	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0028	5781	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0029	5781	1	0	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	c0030	5781	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH1_chr17_10487307_10523542	0/0	c0001	5820	230	46	53	94	7	30	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	1/0	c0002	5820	36	23	8	0	1	3	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0003	5820	24	1	6	17	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0004	5820	11	1	5	1	3	1	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0005	5820	7	0	0	7	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0006	5820	5	0	2	3	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0007	5820	4	4	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0008	5820	4	0	4	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0009	5820	3	0	0	3	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0010	5820	3	3	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0011	5820	3	1	0	1	0	1	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0012	5820	2	1	1	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0013	5820	2	0	0	0	0	2	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0014	5820	2	0	1	0	1	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0015	5820	2	2	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0016	5820	1	0	1	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0017	5820	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0018	5820	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0019	5820	1	0	0	0	0	1	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0020	5820	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0021	5820	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/1	c0022	5820	1	0	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0023	5820	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0024	5820	1	0	0	0	0	1	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0025	5820	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0026	5820	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0027	5820	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0028	5820	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0029	5820	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0030	5820	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0031	5820	1	0	0	0	0	1	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0032	5820	1	0	1	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0033	5820	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0034	5820	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0035	5820	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0036	5820	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	c0037	2886	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH2_chr17_10516148_10554658	1/0	c0001	5826	136	46	37	33	5	14	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0002	5826	121	7	19	79	1	15	copy fasta	MYH2	chr17	10516148	10554658