JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH2_chr17_10516148_10554658	0/1	c0003	5826	44	12	8	11	4	8	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0004	5826	8	0	3	5	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0005	5826	6	6	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0006	5826	4	0	0	3	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0007	5826	3	2	0	1	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0008	5826	2	1	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0009	5826	2	0	0	2	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0010	5826	2	2	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0011	5826	2	2	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0012	5826	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0013	5826	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0014	5826	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0015	5826	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0016	5826	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0017	5826	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0018	5826	1	0	0	0	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0019	5826	1	0	0	1	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0020	5826	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0021	5826	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0022	5826	1	0	0	1	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0023	5826	1	0	0	1	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0024	5826	1	0	0	0	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0025	5826	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0026	5826	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0027	5826	1	0	0	0	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0028	5826	1	0	0	1	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0029	5826	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0030	5826	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0031	5826	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0032	5826	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	c0033	5826	1	0	0	0	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH3_chr17_10623532_10662309	0/1	c0001	5823	147	22	39	57	11	17	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0002	5823	116	8	19	78	1	10	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	1/0	c0003	5823	27	16	6	0	0	4	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0004	5823	11	3	0	2	1	5	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0005	5823	11	6	1	1	0	3	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0006	5823	10	7	2	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0007	5823	9	8	1	0	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0008	5823	5	0	2	3	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0009	5823	5	5	0	0	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0010	5823	4	0	0	4	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0011	5823	3	3	0	0	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0012	5823	3	3	0	0	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0013	5823	3	2	1	0	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0014	5823	2	0	0	2	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0015	5823	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0016	5823	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0017	5823	1	0	0	0	0	1	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0018	5823	1	1	0	0	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	c0019	5823	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309