JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH4_chr17_10438290_10474559	0/0	c0032	5820	1	0	0	0	1	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	c0033	5820	1	1	0	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	c0034	5820	1	1	0	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	c0035	5820	1	1	0	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH6_chr14_23376987_23413273	1/1	c0001	5820	134	9	35	71	2	15	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0002	5820	40	9	2	19	2	8	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0003	5820	13	1	7	1	2	2	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0004	5820	13	9	1	0	1	2	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0005	5820	12	0	1	9	0	2	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0006	5820	11	7	3	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0007	5820	9	1	1	5	0	2	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0008	5820	9	0	5	2	2	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0009	5820	8	0	2	3	0	3	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0010	5820	6	0	0	6	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0011	5820	4	0	3	0	1	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0012	5820	4	0	3	0	0	1	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0013	5820	4	4	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0014	5820	4	0	0	2	1	1	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0015	5820	3	3	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0016	5820	3	3	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0017	5820	3	2	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0018	5820	3	2	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0019	5820	3	3	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0020	5820	3	3	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0021	5820	3	0	0	2	1	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0022	5820	3	1	1	0	0	1	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0023	5820	3	2	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0024	5820	3	3	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0025	5820	3	3	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0026	5820	2	2	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0027	5820	2	0	1	0	1	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0028	5820	2	0	1	0	1	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0029	5820	2	2	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0030	5820	2	0	0	0	0	2	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0031	5820	2	2	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0032	5820	2	2	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0033	5820	1	0	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0034	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0035	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0036	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0037	5820	1	0	0	0	0	1	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0038	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0039	5820	1	0	0	0	0	1	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0040	5820	1	0	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0041	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0042	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0043	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0044	5820	1	0	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0045	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0046	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273