JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH6_chr14_23376987_23413273	0/0	c0047	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0048	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0049	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0050	5820	1	0	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0051	5820	1	0	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0052	5803	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0053	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0054	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0055	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0056	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0057	5820	1	0	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0058	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0059	5820	1	0	1	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0060	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0061	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0062	5820	1	0	0	0	0	1	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0063	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0064	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0065	5820	1	0	0	0	0	1	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0066	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0067	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0068	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0069	5820	1	0	0	0	0	1	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0070	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0071	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0072	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0073	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0074	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0075	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0076	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0077	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0078	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0079	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0080	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0081	5820	1	0	0	1	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0082	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0083	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	c0084	5820	1	1	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH7B_chr20_34950868_35007437	0/1	c0001	5826	101	11	21	56	3	9	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	1/0	c0002	5826	69	15	17	25	5	6	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0003	5826	31	0	4	18	1	8	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0004	5826	30	4	6	11	2	7	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0005	5826	16	15	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0006	5826	15	14	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0007	5826	9	8	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0008	5826	8	8	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0009	5826	5	1	2	0	2	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0010	5826	5	5	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0011	5826	3	0	0	3	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0012	5826	2	1	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437