JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH7B_chr20_34950868_35007437	0/0	c0013	5826	2	0	0	2	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0014	5826	2	2	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0015	5826	2	0	0	2	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0016	5826	2	0	0	1	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0017	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0018	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0019	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0020	5826	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0021	5843	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0022	5776	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0023	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0024	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0025	5826	1	0	0	0	1	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0026	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0027	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0028	5826	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0029	5826	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0030	5826	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0031	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0032	5826	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0033	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0034	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0035	5826	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0036	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0037	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0038	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0039	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0040	5826	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0041	5826	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0042	5826	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0043	5826	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0044	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0045	5826	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0046	5826	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0047	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0048	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0049	5808	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0050	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0051	5826	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	c0052	5826	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7_chr14_23407740_23440660	1/1	c0001	5808	105	15	17	50	7	14	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0002	5808	61	2	14	33	1	11	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0003	5808	25	9	9	2	3	2	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0004	5808	25	24	1	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0005	5808	22	2	0	16	0	4	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0006	5808	13	1	3	5	1	3	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0007	5808	12	2	6	0	2	2	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0008	5808	10	0	8	0	2	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0009	5808	8	7	1	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0010	5808	7	7	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660