JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH7_chr14_23407740_23440660	0/0	c0011	5808	7	6	1	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0012	5808	6	4	2	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0013	5808	5	0	0	5	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0014	5808	4	4	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0015	5808	3	0	2	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0016	5808	3	3	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0017	5808	3	2	1	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0018	5808	2	2	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0019	5808	2	0	2	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0020	5808	2	0	0	2	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0021	5808	1	0	1	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0022	5808	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0023	5808	1	0	0	1	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0024	5808	1	0	1	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0025	5808	1	0	0	1	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0026	5808	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0027	5808	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0028	5808	1	0	0	1	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0029	5808	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0030	5808	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0031	5808	1	0	0	1	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0032	5808	1	0	0	1	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0033	5808	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0034	5808	1	0	1	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0035	5808	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0036	5808	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0037	5808	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0038	5808	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0039	5808	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0040	5808	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	c0041	5808	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH8_chr17_10385322_10426950	0/1	c0001	5814	128	18	27	65	3	14	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0002	5814	68	10	19	28	3	8	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0003	5814	38	27	7	0	1	3	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0004	5814	17	0	10	1	3	3	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0005	5814	14	0	3	6	1	4	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0006	5814	9	7	0	0	0	2	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0007	5814	8	8	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0008	5814	2	0	0	2	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0009	5814	2	0	0	1	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0010	5814	2	1	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0011	5814	2	0	0	0	0	2	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0012	5814	2	2	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0013	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0014	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0015	5814	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0016	5814	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0017	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0018	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0019	5814	1	0	0	0	1	0	copy fasta	MYH8	chr17	10385322	10426950