JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH8_chr17_10385322_10426950	0/0	c0020	5814	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0021	5814	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0022	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0023	5814	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0024	5814	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0025	5814	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0026	5814	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0027	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0028	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0029	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0030	5814	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0031	5814	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0032	5814	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0033	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0034	5814	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0035	5814	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0036	5814	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0037	5814	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	1/0	c0038	5814	1	0	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0039	5814	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0040	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0041	5814	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0042	5814	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0043	5814	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	c0044	5814	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH9_chr22_36276280_36392967	0/0	c0001	5883	121	54	27	17	8	15	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0002	5883	51	2	11	27	3	8	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/1	c0003	5883	21	6	3	7	0	4	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0004	5883	12	2	1	8	0	1	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0005	5883	7	7	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0006	5883	6	0	6	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	1/0	c0007	5883	3	0	1	1	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0008	5883	2	2	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0009	5883	2	2	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0010	5883	1	0	0	0	1	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0011	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0012	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0013	5883	1	0	0	0	0	1	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0014	5883	1	0	0	1	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0015	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0016	5883	1	0	0	0	0	1	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0017	5883	1	0	0	1	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0018	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0019	5883	1	0	0	0	0	1	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0020	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0021	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0022	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0023	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0024	5883	1	0	0	0	0	1	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	c0025	5883	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967