JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYH9_chr22_36276280_36392967	0/0	c0026	5883	1	0	1	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYL10_chr7_101608330_101634296	1/1	c0001	681	290	52	63	125	15	33	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0002	681	87	35	17	29	1	5	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0003	681	9	9	0	0	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0004	681	4	0	0	4	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0005	681	1	1	0	0	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0006	681	1	0	0	0	0	1	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0007	681	1	0	0	0	1	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0008	681	1	0	0	1	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0009	681	1	1	0	0	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0010	681	1	0	0	1	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0011	681	1	0	0	0	1	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	c0012	681	1	0	0	0	0	1	copy fasta	MYL10	chr7	101608330	101634296
MYL11_chr16_30369802_30382991	1/1	c0001	510	300	86	69	94	14	35	copy fasta	MYL11	chr16	30369802	30382991
MYL11_chr16_30369802_30382991	0/0	c0002	510	2	0	0	2	0	0	copy fasta	MYL11	chr16	30369802	30382991
MYL11_chr16_30369802_30382991	0/0	c0003	510	1	0	0	0	0	1	copy fasta	MYL11	chr16	30369802	30382991
MYL11_chr16_30369802_30382991	0/0	c0004	472	1	0	1	0	0	0	copy fasta	MYL11	chr16	30369802	30382991
MYL12A_chr18_3242801_3261236	1/1	c0001	516	446	94	77	222	12	39	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	c0002	516	4	4	0	0	0	0	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	c0003	516	1	0	0	0	0	1	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	c0004	516	1	0	1	0	0	0	copy fasta	MYL12A	chr18	3242801	3261236
MYL12B_chr18_3257133_3283461	1/1	c0001	519	423	93	66	210	12	40	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	c0002	519	7	5	2	0	0	0	copy fasta	MYL12B	chr18	3257133	3283461
MYL1_chr2_210285150_210320174	1/1	c0001	585	368	68	73	172	12	41	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	c0002	585	16	11	0	0	0	5	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	c0003	586	11	10	1	0	0	0	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	c0004	585	2	2	0	0	0	0	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	c0005	586	1	1	0	0	0	0	copy fasta	MYL1	chr2	210285150	210320174
MYL2_chr12_110905845_110925579	1/1	c0001	501	305	75	59	121	14	34	copy fasta	MYL2	chr12	110905845	110925579
MYL2_chr12_110905845_110925579	0/0	c0002	501	57	4	1	36	2	14	copy fasta	MYL2	chr12	110905845	110925579
MYL2_chr12_110905845_110925579	0/0	c0003	501	3	0	0	3	0	0	copy fasta	MYL2	chr12	110905845	110925579
MYL2_chr12_110905845_110925579	0/0	c0004	501	2	2	0	0	0	0	copy fasta	MYL2	chr12	110905845	110925579
MYL2_chr12_110905845_110925579	0/0	c0005	501	1	1	0	0	0	0	copy fasta	MYL2	chr12	110905845	110925579
MYL3_chr3_46852872_46868444	1/1	c0001	588	369	90	74	148	16	39	copy fasta	MYL3	chr3	46852872	46868444
MYL3_chr3_46852872_46868444	0/0	c0002	588	27	4	0	22	0	1	copy fasta	MYL3	chr3	46852872	46868444
MYL4_chr17_47204348_47228679	1/1	c0001	594	405	91	80	175	14	43	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	c0002	594	3	3	0	0	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	c0003	594	1	0	0	1	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	c0004	594	1	1	0	0	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	c0005	594	1	0	0	0	0	1	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	c0006	594	1	0	0	1	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	c0007	594	1	1	0	0	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	c0008	594	1	0	0	1	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL5_chr4_669542_687028	1/1	c0001	522	337	83	80	119	16	37	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0002	522	56	0	0	53	0	3	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0003	522	5	1	1	0	2	1	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0004	522	2	0	0	2	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0005	522	2	2	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0006	522	2	2	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0007	522	2	1	1	0	0	0	copy fasta	MYL5	chr4	669542	687028