JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANXA8L1_chr10_46370776_46396778	0/0	c0017	984	1	0	0	1	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0018	984	1	0	0	1	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0019	984	1	0	0	0	0	1	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0020	984	1	0	0	1	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	c0021	984	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8_chr10_47462993_47489115	1/1	c0001	984	236	49	41	105	16	23	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0002	984	99	1	10	80	1	7	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0003	984	8	7	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0004	984	8	7	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0005	984	6	0	4	0	0	2	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0006	984	6	0	6	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0007	984	6	0	0	5	1	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0008	984	6	6	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0009	984	5	5	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0010	984	5	0	0	5	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0011	984	4	0	0	4	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0012	984	4	2	2	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0013	984	3	2	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0014	984	3	3	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0015	984	2	1	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0016	984	2	0	0	2	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0017	984	1	0	0	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0018	984	1	0	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0019	984	1	1	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0020	984	1	0	0	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0021	984	1	0	0	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0022	984	1	0	0	0	0	1	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0023	984	1	0	0	0	0	1	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0024	984	1	0	0	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	c0025	984	1	0	0	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA9_chr1_150977292_151000634	1/0	c0001	1038	179	40	48	62	10	18	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/1	c0002	1038	176	33	23	89	7	23	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0003	1038	15	1	2	7	1	4	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0004	1038	10	10	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0005	1038	4	4	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0006	1038	3	0	0	3	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0007	1038	3	0	2	0	0	1	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0008	1038	1	0	0	1	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0009	1038	1	1	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0010	1038	1	1	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0011	1038	1	0	1	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0012	1038	1	0	0	1	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0013	1038	1	1	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0014	1038	1	1	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	c0015	1038	1	0	0	1	0	0	copy fasta	ANXA9	chr1	150977292	151000634
AOAH_chr7_36507941_36729494	0/1	c0001	1728	123	45	19	49	3	6	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0002	1728	66	9	12	34	4	7	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	1/0	c0003	1728	47	14	12	5	4	11	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0004	1728	12	0	8	4	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0005	1728	7	0	0	7	0	0	copy fasta	AOAH	chr7	36507941	36729494