JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYL5_chr4_669542_687028	0/0	c0008	522	1	0	1	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0009	522	1	1	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0010	522	1	0	0	0	0	1	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0011	522	1	1	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0012	522	1	0	1	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	c0013	522	1	1	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL6B_chr12_56147587_56162982	0/0	c0001	627	357	85	64	163	16	29	copy fasta	MYL6B	chr12	56147587	56162982
MYL6B_chr12_56147587_56162982	0/0	c0002	627	1	0	0	0	0	1	copy fasta	MYL6B	chr12	56147587	56162982
MYL6B_chr12_56147587_56162982	0/0	c0003	627	1	0	0	1	0	0	copy fasta	MYL6B	chr12	56147587	56162982
MYL6B_chr12_56147587_56162982	0/0	c0004	627	1	1	0	0	0	0	copy fasta	MYL6B	chr12	56147587	56162982
MYL6_chr12_56153359_56166579	1/1	c0001	456	336	84	68	142	12	28	copy fasta	MYL6	chr12	56153359	56166579
MYL6_chr12_56153359_56166579	0/0	c0002	456	1	0	1	0	0	0	copy fasta	MYL6	chr12	56153359	56166579
MYL6_chr12_56153359_56166579	0/0	c0003	456	1	0	1	0	0	0	copy fasta	MYL6	chr12	56153359	56166579
MYL7_chr7_44133864_44146332	1/1	c0001	528	381	89	75	163	12	40	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	c0002	528	54	6	2	38	4	4	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	c0003	528	2	2	0	0	0	0	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	c0004	528	1	0	0	1	0	0	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	c0005	528	1	1	0	0	0	0	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	c0006	528	1	0	1	0	0	0	copy fasta	MYL7	chr7	44133864	44146332
MYL9_chr20_36536519_36556447	1/1	c0001	519	394	85	75	173	16	43	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	c0002	519	8	7	0	0	0	1	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	c0003	519	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	c0004	519	1	0	0	1	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYLIP_chr6_16124086_16153248	0/1	c0001	1338	359	95	45	190	1	27	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	1/0	c0002	1338	40	1	13	8	6	11	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	c0003	1338	8	0	4	0	4	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	c0004	1338	3	0	2	0	1	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	c0005	1338	1	0	0	0	0	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	c0006	1338	1	1	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	c0007	1338	1	0	0	1	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	c0008	1338	1	0	0	0	0	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	c0009	1338	1	0	0	1	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	c0010	1338	1	1	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLK2_chr20_31814356_31839684	1/1	c0001	1791	288	70	66	103	14	33	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0002	1791	20	9	8	0	1	2	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0003	1791	5	5	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0004	1791	2	0	0	1	0	1	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0005	1791	2	0	1	0	1	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0006	1791	2	0	0	2	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0007	1791	1	1	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0008	1791	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0009	1791	1	0	1	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0010	1791	1	1	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0011	1791	1	1	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0012	1791	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0013	1791	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0014	1791	1	1	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0015	1791	1	0	1	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0016	1791	1	0	1	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	c0017	1791	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684