JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYLK3_chr16_46697282_46753344	1/0	c0001	2460	125	64	27	22	4	7	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/1	c0002	2460	82	9	18	22	5	27	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0003	2460	3	0	2	0	1	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0004	2460	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0005	2460	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0006	2460	1	0	0	1	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0007	2460	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0008	2460	1	0	1	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0009	2460	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0010	2460	1	0	0	1	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	c0011	2460	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK4_chr6_2658637_2755922	1/1	c0001	1167	282	75	52	111	15	27	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	c0002	1167	76	1	15	54	1	5	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	c0003	1167	16	2	6	0	2	6	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	c0004	1167	5	5	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	c0005	1167	2	2	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	c0006	1167	1	0	1	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	c0007	1167	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	c0008	1167	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK_chr3_123605049_123889332	0/0	c0001	5745	11	2	1	8	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0002	5742	8	0	1	6	0	1	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0003	5742	8	0	0	7	0	1	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0004	5745	7	0	5	1	0	1	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/1	c0005	5745	7	1	0	0	2	3	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0006	5745	5	1	2	1	0	1	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0007	5745	4	3	1	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0008	5745	3	0	3	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0009	5745	3	2	1	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0010	5745	3	3	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0011	5745	3	0	3	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0012	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0013	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0014	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0015	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0016	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0017	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0018	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0019	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0020	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0021	5745	2	1	0	1	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0022	5745	2	0	2	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0023	5745	2	2	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0024	5745	2	0	1	1	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0025	5745	2	0	1	0	0	1	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0026	5745	2	1	1	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0027	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0028	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0029	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0030	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0031	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332