JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYLK_chr3_123605049_123889332	0/0	c0082	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0083	5745	1	0	0	0	1	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0084	5745	1	0	0	1	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0085	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0086	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0087	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0088	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0089	5745	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	c0090	5745	1	0	1	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYMK_chr9_133509586_133529959	0/1	c0001	666	297	59	61	136	13	27	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	1/0	c0002	666	150	35	20	68	5	21	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	0/0	c0003	666	4	4	0	0	0	0	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	0/0	c0004	666	3	0	0	3	0	0	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	0/0	c0005	666	1	0	1	0	0	0	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	0/0	c0006	666	1	0	0	1	0	0	copy fasta	MYMK	chr9	133509586	133529959
MYMX_chr6_44211926_44223234	0/1	c0001	255	260	74	46	97	11	31	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	1/0	c0002	255	95	1	27	53	4	9	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	c0003	255	67	7	8	43	1	8	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	c0004	255	6	5	1	0	0	0	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	c0005	255	5	5	0	0	0	0	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	c0006	255	1	0	0	1	0	0	copy fasta	MYMX	chr6	44211926	44223234
MYNN_chr3_169768396_169794716	1/1	c0001	1833	233	90	46	64	7	24	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	c0002	1833	112	4	18	78	1	11	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	c0003	1833	1	0	0	0	0	1	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	c0004	1833	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	c0005	1833	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	c0006	1833	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	c0007	1833	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYO10_chr5_16656907_16941288	0/0	c0001	6177	47	12	17	17	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/1	c0002	6177	46	11	8	22	1	3	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0003	6177	20	1	2	12	0	5	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0004	6177	16	4	3	6	0	3	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0005	6177	11	7	1	1	0	2	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	1/0	c0006	6177	10	0	2	7	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0007	6177	10	1	3	4	1	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0008	6177	9	0	1	5	1	2	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0009	6177	8	1	1	3	1	2	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0010	6177	6	0	1	3	0	2	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0011	6177	4	0	0	3	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0012	6177	4	0	0	4	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0013	6177	4	0	2	2	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0014	6177	4	4	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0015	6177	3	3	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0016	6177	3	0	3	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0017	6177	3	2	1	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0018	6177	2	0	0	2	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0019	6177	2	0	0	2	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0020	6177	2	1	0	0	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0021	6177	2	0	0	1	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	c0022	6177	2	2	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288