JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO15A_chr17_18103756_18184800	0/0	c0003	10593	28	2	5	18	0	3	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0004	10593	23	1	4	12	1	5	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0005	10593	18	7	5	0	1	5	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0006	10593	9	4	2	1	1	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0007	10593	7	0	0	7	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0008	10593	6	5	1	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0009	10593	6	2	0	4	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0010	10593	6	0	0	5	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0011	10593	5	5	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0012	10593	5	5	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0013	10593	5	2	2	0	1	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	1/0	c0014	10593	5	0	4	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0015	10593	4	0	0	4	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0016	10594	4	0	0	3	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0017	10593	4	4	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0018	10593	3	0	0	3	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0019	10593	3	0	3	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0020	10593	3	2	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0021	10593	3	0	3	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0022	10593	3	0	0	3	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0023	10593	3	0	0	3	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0024	10593	3	1	0	2	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0025	10593	3	3	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0026	10594	2	0	0	2	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0027	10593	2	0	0	0	0	2	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0028	10593	2	0	0	1	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0029	10593	2	0	0	2	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0030	10593	2	0	0	1	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0031	10593	2	0	2	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0032	10593	2	2	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0033	10593	2	2	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0034	10593	2	0	0	2	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0035	10593	2	0	2	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0036	10593	2	0	0	2	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0037	10593	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0038	10593	1	1	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0039	10593	1	1	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0040	10594	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0041	10594	1	0	0	0	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0042	10593	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0043	10593	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0044	10594	1	0	0	0	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0045	10593	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0046	10593	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0047	10593	1	0	0	0	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0048	10593	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0049	10593	1	0	0	0	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0050	10593	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0051	10593	1	0	0	0	0	1	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0052	10593	1	0	0	0	0	1	copy fasta	MYO15A	chr17	18103756	18184800