JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO15A_chr17_18103756_18184800	0/0	c0103	10593	1	1	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	c0104	10593	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15B_chr17_75582800_75631849	0/0	c0001	9291	43	3	11	17	3	9	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0002	9291	24	0	7	10	0	7	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0003	9291	16	1	2	10	1	2	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0004	9291	8	0	2	4	2	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0005	9291	7	0	1	6	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0006	9291	6	0	1	4	0	1	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0007	9291	6	1	2	1	1	1	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0008	9247	5	0	0	4	0	1	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0009	9291	5	0	2	3	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0010	9237	5	0	1	4	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0011	9237	5	0	4	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0012	9291	5	0	0	5	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0013	9291	4	4	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0014	9291	3	3	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0015	9291	3	3	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0016	9291	3	0	0	3	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0017	9291	3	3	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0018	9291	3	3	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0019	9291	3	3	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0020	9291	3	0	0	3	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0021	9291	3	3	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0022	9288	3	0	0	3	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0023	9291	3	0	0	3	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0024	9247	2	0	2	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0025	9247	2	0	0	2	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0026	9247	2	0	1	0	0	1	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0027	9291	2	2	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0028	9291	2	2	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0029	9291	2	0	0	2	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0030	9291	2	0	0	2	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0031	9289	2	2	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0032	9291	2	0	0	2	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0033	9285	2	1	1	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0034	9291	2	1	1	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0035	9291	2	2	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0036	9291	2	2	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0037	9247	2	0	2	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0038	9247	2	2	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0039	9245	2	1	1	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0040	9245	2	2	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0041	9291	2	0	0	2	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0042	9291	2	0	1	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0043	9291	2	0	0	0	2	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0044	9291	2	0	1	0	1	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0045	9291	2	0	0	0	2	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0046	9291	2	0	2	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0047	9291	2	0	0	2	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0048	9291	2	0	2	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849