JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AOAH_chr7_36507941_36729494	0/0	c0006	1728	6	6	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0007	1728	5	4	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0008	1728	5	0	1	3	0	1	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0009	1728	5	0	1	4	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0010	1728	5	1	3	0	1	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0011	1728	3	0	0	3	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0012	1728	3	2	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0013	1728	3	0	1	0	1	1	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0014	1728	2	0	0	0	1	1	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0015	1728	2	0	0	2	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0016	1728	1	0	0	1	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0017	1728	1	0	0	1	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0018	1728	1	1	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0019	1728	1	0	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0020	1728	1	0	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0021	1728	1	1	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0022	1728	1	0	0	1	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0023	1728	1	0	0	0	0	1	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0024	1728	1	0	0	0	0	1	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0025	1728	1	1	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0026	1728	1	0	0	0	0	1	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	c0027	1728	1	0	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOC1_chr7_150847517_150866504	0/1	c0001	2256	123	11	18	74	3	16	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0002	2256	109	12	24	63	2	8	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0003	2256	37	12	8	7	5	5	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0004	2256	23	13	5	0	1	4	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0005	2256	19	0	5	7	0	7	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0006	2256	19	7	10	0	0	2	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0007	2256	16	8	0	8	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0008	2256	13	11	1	0	0	1	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0009	2256	8	6	0	2	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0010	2256	5	0	0	5	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0011	2256	5	1	2	2	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0012	2256	4	1	2	0	0	1	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0013	2256	3	0	0	3	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0014	2256	3	0	3	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0015	2256	3	3	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0016	2256	2	0	0	2	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0017	2256	2	2	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0018	2256	2	0	2	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0019	2256	2	1	0	0	0	1	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0020	2256	2	0	0	2	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0021	2256	2	0	0	0	2	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0022	2256	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0023	2256	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0024	2256	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0025	2256	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0026	2256	1	0	0	0	0	1	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0027	2256	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	1/0	c0028	2256	1	0	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504