JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO15B_chr17_75582800_75631849	0/0	c0199	9291	1	0	0	0	0	1	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0200	9291	1	0	0	0	0	1	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0201	9291	1	0	0	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0202	9288	1	0	0	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0203	9291	1	0	1	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0204	9291	1	0	0	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0205	9288	1	0	0	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0206	9291	1	0	0	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0207	9291	1	0	0	0	0	1	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	c0208	9309	1	0	0	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO16_chr13_108624611_109213005	0/1	c0001	5643	26	6	9	7	0	3	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0002	5643	22	14	3	4	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0003	5643	6	0	2	4	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0004	5643	5	0	1	3	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0005	5643	4	3	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0006	5643	4	4	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0007	5643	3	0	2	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0008	5643	3	3	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0009	5643	3	3	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0010	5643	2	2	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0011	5643	2	0	0	1	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0012	5643	2	0	1	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0013	5643	2	1	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0014	5643	2	0	1	0	1	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0015	5643	2	0	2	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0016	5643	2	0	1	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0017	5643	2	0	1	0	1	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0018	5643	2	2	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0019	5643	2	0	2	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0020	5643	2	1	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0021	5643	2	1	0	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0022	5643	2	2	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0023	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0024	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0025	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0026	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0027	5643	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0028	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0029	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0030	5643	1	0	0	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0031	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0032	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0033	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0034	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0035	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0036	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0037	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0038	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0039	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0040	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005