JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO16_chr13_108624611_109213005	0/0	c0041	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0042	5643	1	0	0	0	1	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0043	5643	1	0	0	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0044	5643	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0045	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	1/0	c0046	5643	1	0	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0047	5643	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0048	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0049	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0050	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0051	5643	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0052	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0053	5643	1	0	0	0	1	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0054	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0055	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0056	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0057	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0058	5643	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0059	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0060	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0061	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0062	5643	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0063	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0064	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0065	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0066	5643	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0067	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0068	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0069	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0070	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0071	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	c0072	5643	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO18A_chr17_29066122_29185398	0/0	c0001	6165	74	12	19	34	0	9	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	1/0	c0002	6165	69	18	21	11	3	15	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0003	6165	68	6	14	40	2	6	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0004	6165	19	7	3	4	2	3	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/1	c0005	6165	12	0	4	2	1	4	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0006	6165	8	7	0	0	1	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0007	6165	8	8	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0008	6165	6	5	0	0	0	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0009	6165	4	3	1	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0010	6165	4	3	1	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0011	6165	4	1	1	0	1	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0012	6165	3	3	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0013	6165	3	3	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0014	6165	2	2	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0015	6165	2	2	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0016	6165	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0017	6165	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	c0018	6165	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398