JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO18B_chr22_25737188_26036045	0/0	c0134	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0135	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0136	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/1	c0137	7704	1	0	0	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0138	7704	1	1	0	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0139	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0140	7704	1	0	0	0	0	1	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0141	7704	1	0	0	1	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0142	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	1/0	c0143	7704	1	0	0	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0144	7704	1	0	0	0	0	1	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0145	7704	1	0	0	1	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0146	7704	1	0	0	0	0	1	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0147	7704	1	0	0	0	0	1	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0148	7704	1	0	0	1	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0149	7704	1	0	0	1	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0150	7704	1	0	0	0	1	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0151	7704	1	1	0	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0152	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0153	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0154	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0155	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0156	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0157	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	c0158	7704	1	0	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO19_chr17_36490636_36539868	0/1	c0001	2913	151	42	28	61	3	16	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0002	2913	98	1	20	60	5	12	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0003	2913	42	9	7	17	1	8	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0004	2913	29	0	5	21	2	1	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0005	2913	20	13	2	3	1	1	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0006	2913	5	5	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0007	2913	3	0	0	3	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0008	2913	2	2	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0009	2913	2	2	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0010	2913	2	2	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0011	2913	2	2	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0012	2913	2	1	1	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0013	2913	1	1	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0014	2913	1	1	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0015	2913	1	0	1	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0016	2913	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0017	2913	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0018	2913	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0019	2913	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0020	2913	1	1	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0021	2913	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0022	2913	1	1	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0023	2913	1	0	0	0	0	1	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0024	2913	1	1	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0025	2913	1	0	0	0	0	1	copy fasta	MYO19	chr17	36490636	36539868