JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO19_chr17_36490636_36539868	0/0	c0026	2913	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	c0027	2913	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO1A_chr12_57023517_57055129	1/1	c0001	3132	241	60	44	94	9	32	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0002	3132	60	14	13	25	3	5	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0003	3132	11	0	11	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0004	3132	6	4	2	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0005	3132	4	0	2	0	1	1	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0006	3132	4	3	1	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0007	3132	3	0	1	0	0	2	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0008	3132	3	3	0	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0009	3132	3	0	0	3	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0010	3132	2	0	0	2	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0011	3132	1	0	0	1	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0012	3132	1	0	1	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0013	3132	1	1	0	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0014	3132	1	0	0	1	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0015	3132	1	0	0	1	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0016	3132	1	0	0	1	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0017	3132	1	1	0	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0018	3132	1	1	0	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0019	3132	1	0	1	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0020	3132	1	1	0	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	c0021	3132	1	0	0	0	1	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1B_chr2_191240404_191430386	0/0	c0001	3411	47	11	10	16	3	7	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/1	c0002	3411	40	5	8	18	2	6	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	1/0	c0003	3411	21	16	2	0	1	1	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0004	3411	20	10	3	7	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0005	3411	10	9	1	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0006	3411	9	9	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0007	3411	3	3	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0008	3411	3	3	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0009	3411	3	3	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0010	3411	2	2	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0011	3411	2	2	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0012	3411	2	1	0	1	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0013	3411	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0014	3411	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0015	3411	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0016	3411	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0017	3411	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0018	3411	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0019	3411	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	c0020	3411	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1C_chr17_1459186_1497686	0/0	c0001	3192	101	16	33	30	4	18	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	1/0	c0002	3192	80	0	15	55	2	7	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0003	3192	45	26	9	2	2	6	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0004	3192	29	8	3	15	0	3	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0005	3192	27	0	4	23	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0006	3192	19	10	0	9	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0007	3192	14	5	6	1	2	0	copy fasta	MYO1C	chr17	1459186	1497686