JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO1C_chr17_1459186_1497686	0/0	c0008	3192	8	8	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0009	3192	6	0	0	6	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0010	3192	5	3	0	0	0	2	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0011	3192	5	0	2	1	1	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0012	3192	5	3	2	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0013	3192	5	0	0	5	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0014	3192	5	0	1	4	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/1	c0015	3192	4	1	0	1	1	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0016	3192	4	0	3	0	0	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0017	3192	3	0	0	1	0	2	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0018	3192	2	0	0	0	1	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0019	3192	2	0	0	1	1	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0020	3192	2	0	0	2	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0021	3192	2	2	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0022	3192	2	2	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0023	3192	2	0	0	2	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0024	3192	2	0	0	0	1	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0025	3192	2	0	2	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0026	3192	2	0	1	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0027	3192	2	0	0	2	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0028	3192	2	0	0	1	0	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0029	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0030	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0031	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0032	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0033	3192	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0034	3192	1	0	0	0	0	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0035	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0036	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0037	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0038	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0039	3192	1	0	0	0	1	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0040	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0041	3192	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0042	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0043	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0044	3192	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0045	3192	1	0	0	0	0	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0046	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0047	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0048	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0049	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0050	3192	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0051	3192	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0052	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0053	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0054	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0055	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0056	3192	1	0	0	0	0	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0057	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686